Detailed information of SNP:
|
SNP ID:
sf0226823107(Gbrowse)
Chromosome: chr02 Position: 26823107 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 94.72% | 5.28% |
| All Indica | 787 | 96.82% | 3.18% |
| All Japonica | 492 | 90.04% | 9.96% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 97.83% | 2.17% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 333 | 92.49% | 7.51% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226823107 | C->T | LOC_Os02g44350(LOC_Os02g44350.1) | Non-Synonymous SNP |