Detailed information of SNP:
|
SNP ID:
sf0226897585(Gbrowse)
Chromosome: chr02 Position: 26897585 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1345 | 57.40% | 42.60% |
| All Indica | 732 | 95.22% | 4.78% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 342 | 95.61% | 4.39% |
| Indica II | 194 | 94.33% | 5.67% |
| Indica Intermediate | 196 | 95.41% | 4.59% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0226897585 | G->A | LOC_Os02g44430(LOC_Os02g44430.1) | INTRON |