Detailed information of SNP:
|
SNP ID:
sf0227030781(Gbrowse)
Chromosome: chr02 Position: 27030781 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227030781 | G->A | INTERGENIC | None |