Detailed information of SNP:
|
SNP ID:
sf0227100914(Gbrowse)
Chromosome: chr02 Position: 27100914 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1304 | 56.52% | 43.48% |
| All Indica | 693 | 95.67% | 4.33% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 58 | 89.66% | 10.34% |
| Indica I | 319 | 96.55% | 3.45% |
| Indica II | 195 | 95.38% | 4.62% |
| Indica Intermediate | 179 | 94.41% | 5.59% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227100914 | C->T | LOC_Os02g44740(LOC_Os02g44740.1) | INTRON |