Detailed information of SNP:
|
SNP ID:
sf0227167278(Gbrowse)
Chromosome: chr02 Position: 27167278 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 61.74% | 38.26% |
| All Indica | 727 | 32.05% | 67.95% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 337 | 22.85% | 77.15% |
| Indica II | 201 | 32.84% | 67.16% |
| Indica Intermediate | 189 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227167278 | G->C | INTERGENIC | None |