Detailed information of SNP:
|
SNP ID:
sf0227372516(Gbrowse)
Chromosome: chr02 Position: 27372516 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.83% | 39.17% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227372516 | G->A | LOC_Os02g45140(LOC_Os02g45140.1) | INTRON |