Detailed information of SNP:
|
SNP ID:
sf0227376545(Gbrowse)
Chromosome: chr02 Position: 27376545 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1210 | 65.04% | 34.96% |
| All Indica | 605 | 40.00% | 60.00% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 20.69% | 79.31% |
| Indica I | 277 | 43.32% | 56.68% |
| Indica II | 160 | 33.12% | 66.88% |
| Indica Intermediate | 168 | 41.07% | 58.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227376545 | C->T | INTERGENIC | None |