Detailed information of SNP:



SNP ID: sf0227389826(Gbrowse)

Chromosome: chr02

Position: 27389826
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 91.17% 8.83%
All Indica799 99.12% 0.88%
All Japonica493 76.47% 23.53%
Aus67 100.00% 0.00%
Indica I375 98.67% 1.33%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica333 67.87% 32.13%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate66 90.91% 9.09%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0227389826 T->C INTERGENIC None