Detailed information of SNP:
|
SNP ID:
sf0227462161(Gbrowse)
Chromosome: chr02 Position: 27462161 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.00% | 25.00% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 495 | 32.53% | 67.47% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 30.84% | 69.16% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227462161 | C->T | INTERGENIC | None |