Detailed information of SNP:
|
SNP ID:
sf0227499224(Gbrowse)
Chromosome: chr02 Position: 27499224 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 98.07% | 1.93% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 378 | 93.65% | 6.35% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 250 | 90.40% | 9.60% |
| Tropical Japonica | 76 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227499224 | C->T | INTERGENIC | None |