Detailed information of SNP:
|
SNP ID:
sf0227527152(Gbrowse)
Chromosome: chr02 Position: 27527152 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 97.78% | 2.22% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 476 | 94.33% | 5.67% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 323 | 91.95% | 8.05% |
| Tropical Japonica | 87 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227527152 | C->T | LOC_Os02g45310(LOC_Os02g45310.1) | INTRON |