Detailed information of SNP:
|
SNP ID:
sf0227538117(Gbrowse)
Chromosome: chr02 Position: 27538117 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 96.83% | 3.17% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 443 | 90.74% | 9.26% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 301 | 86.38% | 13.62% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227538117 | C->T | INTERGENIC | None |