Detailed information of SNP:
|
SNP ID:
sf0227592469(Gbrowse)
Chromosome: chr02 Position: 27592469 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 97.84% | 2.16% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 388 | 93.30% | 6.70% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 258 | 99.22% | 0.78% |
| Tropical Japonica | 79 | 83.54% | 16.46% |
| Japonica Intermediate | 51 | 78.43% | 21.57% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227592469 | G->A | INTERGENIC | None |