Detailed information of SNP:
|
SNP ID:
sf0227632024(Gbrowse)
Chromosome: chr02 Position: 27632024 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 95.71% | 4.29% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 389 | 86.63% | 13.37% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 249 | 80.32% | 19.68% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 94.55% | 5.45% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227632024 | C->T | INTERGENIC | None |