Detailed information of SNP:
|
SNP ID:
sf0227707882(Gbrowse)
Chromosome: chr02 Position: 27707882 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1337 | 94.24% | 5.76% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 416 | 82.93% | 17.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 272 | 88.60% | 11.40% |
| Tropical Japonica | 86 | 74.42% | 25.58% |
| Japonica Intermediate | 58 | 68.97% | 31.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227707882 | T->C | INTERGENIC | None |