Detailed information of SNP:
|
SNP ID:
sf0227782898(Gbrowse)
Chromosome: chr02 Position: 27782898 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 93.86% | 6.14% |
| All Indica | 784 | 89.80% | 10.20% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 206 | 76.21% | 23.79% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227782898 | G->A | LOC_Os02g45680(LOC_Os02g45680.1) | INTRON |