Detailed information of SNP:
|
SNP ID:
sf0227784818(Gbrowse)
Chromosome: chr02 Position: 27784818 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.77% | 43.23% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227784818 | A->G | LOC_Os02g45680(LOC_Os02g45680.1) | INTRON |