Detailed information of SNP:
|
SNP ID:
sf0227919001(Gbrowse)
Chromosome: chr02 Position: 27919001 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 71.26% | 28.74% |
| All Indica | 795 | 97.86% | 2.14% |
| All Japonica | 487 | 24.64% | 75.36% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 330 | 24.55% | 75.45% |
| Tropical Japonica | 91 | 36.26% | 63.74% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227919001 | T->C | INTERGENIC | None |