Detailed information of SNP:
|
SNP ID:
sf0227951960(Gbrowse)
Chromosome: chr02 Position: 27951960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.72% | 6.28% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 91.52% | 8.48% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 59.78% | 40.22% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0227951960 | G->A | INTERGENIC | None |