Detailed information of SNP:



SNP ID: sf0228004226(Gbrowse)

Chromosome: chr02

Position: 28004226
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 98.80% 1.20%
All Indica799 99.87% 0.13%
All Japonica497 96.78% 3.22%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 95.22% 4.78%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0228004226 C->T LOC_Os02g45969(LOC_Os02g45969.1) INTRON