Detailed information of SNP:
|
SNP ID:
sf0228023075(Gbrowse)
Chromosome: chr02 Position: 28023075 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.19% | 37.81% |
| All Indica | 797 | 93.85% | 6.15% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228023075 | A->G | LOC_Os02g46000(LOC_Os02g46000.1) | Non-Synonymous SNP |