Detailed information of SNP:
|
SNP ID:
sf0228028807(Gbrowse)
Chromosome: chr02 Position: 28028807 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 63.54% | 36.46% |
| All Indica | 790 | 95.82% | 4.18% |
| All Japonica | 495 | 8.08% | 91.92% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228028807 | A->T | INTERGENIC | None |