Detailed information of SNP:
|
SNP ID:
sf0228139239(Gbrowse)
Chromosome: chr02 Position: 28139239 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1171 | 56.11% | 43.89% |
| All Indica | 718 | 84.12% | 15.88% |
| All Japonica | 345 | 10.43% | 89.57% |
| Aus | 59 | 3.39% | 96.61% |
| Indica I | 339 | 91.45% | 8.55% |
| Indica II | 187 | 69.52% | 30.48% |
| Indica Intermediate | 192 | 85.42% | 14.58% |
| Temperate Japonica | 226 | 13.27% | 86.73% |
| Tropical Japonica | 65 | 4.62% | 95.38% |
| Japonica Intermediate | 54 | 5.56% | 94.44% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228139239 | T->A | INTERGENIC | None |