Detailed information of SNP:
|
SNP ID:
sf0228169544(Gbrowse)
Chromosome: chr02 Position: 28169544 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 85.42% | 14.58% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 412 | 59.22% | 40.78% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 268 | 72.39% | 27.61% |
| Tropical Japonica | 87 | 33.33% | 66.67% |
| Japonica Intermediate | 57 | 36.84% | 63.16% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228169544 | G->A | INTERGENIC | None |