Detailed information of SNP:
|
SNP ID:
sf0228198405(Gbrowse)
Chromosome: chr02 Position: 28198405 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 60.47% | 39.53% |
| All Indica | 776 | 97.94% | 2.06% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 360 | 98.33% | 1.67% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228198405 | G->A | INTERGENIC | None |