Detailed information of SNP:
|
SNP ID:
sf0228205071(Gbrowse)
Chromosome: chr02 Position: 28205071 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.84% | 48.16% |
| All Indica | 796 | 18.09% | 81.91% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 11.50% | 88.50% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 209 | 23.92% | 76.08% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228205071 | G->T | INTERGENIC | None |