Detailed information of SNP:
|
SNP ID:
sf0228205163(Gbrowse)
Chromosome: chr02 Position: 28205163 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 56.54% | 43.46% |
| All Indica | 794 | 25.44% | 74.56% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 373 | 16.89% | 83.11% |
| Indica II | 212 | 25.00% | 75.00% |
| Indica Intermediate | 209 | 41.15% | 58.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228205163 | C->T | INTERGENIC | None |