Detailed information of SNP:
|
SNP ID:
sf0228205589(Gbrowse)
Chromosome: chr02 Position: 28205589 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.52% | 48.48% |
| All Indica | 796 | 17.84% | 82.16% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 11.23% | 88.77% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 209 | 23.44% | 76.56% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228205589 | G->A | INTERGENIC | None |