Detailed information of SNP:
|
SNP ID:
sf0228205638(Gbrowse)
Chromosome: chr02 Position: 28205638 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.87% | 48.13% |
| All Indica | 795 | 18.24% | 81.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 11.26% | 88.74% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 209 | 23.92% | 76.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228205638 | G->A | INTERGENIC | None |