Detailed information of SNP:
|
SNP ID:
sf0228211429(Gbrowse)
Chromosome: chr02 Position: 28211429 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 82.45% | 17.55% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 440 | 48.64% | 51.36% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 289 | 31.14% | 68.86% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 61 | 65.57% | 34.43% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228211429 | T->C | INTERGENIC | None |