Detailed information of SNP:
|
SNP ID:
sf0228267072(Gbrowse)
Chromosome: chr02 Position: 28267072 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 92.92% | 7.08% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 463 | 82.51% | 17.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 92.40% | 7.60% |
| Tropical Japonica | 75 | 58.67% | 41.33% |
| Japonica Intermediate | 59 | 57.63% | 42.37% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228267072 | G->A | INTERGENIC | None |