Detailed information of SNP:
|
SNP ID:
sf0228269530(Gbrowse)
Chromosome: chr02 Position: 28269530 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 59.28% | 40.72% |
| All Indica | 764 | 98.95% | 1.05% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 366 | 98.91% | 1.09% |
| Indica II | 196 | 99.49% | 0.51% |
| Indica Intermediate | 202 | 98.51% | 1.49% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228269530 | A->T | INTERGENIC | None |