Detailed information of SNP:
|
SNP ID:
sf0228289752(Gbrowse)
Chromosome: chr02 Position: 28289752 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 60.34% | 39.66% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228289752 | A->G | LOC_Os02g46450(LOC_Os02g46450.2) | Non-Synonymous SNP |
| sf0228289752 | A->G | LOC_Os02g46450(LOC_Os02g46450.1) | Non-Synonymous SNP |