Detailed information of SNP:
|
SNP ID:
sf0228314310(Gbrowse)
Chromosome: chr02 Position: 28314310 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 98.33% | 1.67% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 407 | 94.84% | 5.16% |
| Aus | 59 | 98.31% | 1.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 276 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 85.19% | 14.81% |
| Japonica Intermediate | 50 | 82.00% | 18.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228314310 | C->T | INTERGENIC | None |