Detailed information of SNP:
|
SNP ID:
sf0228371503(Gbrowse)
Chromosome: chr02 Position: 28371503 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 88.42% | 11.58% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 81.17% | 18.83% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 95.50% | 4.50% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228371503 | A->G | INTERGENIC | None |