Detailed information of SNP:
|
SNP ID:
sf0228400784(Gbrowse)
Chromosome: chr02 Position: 28400784 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1274 | 51.10% | 48.90% |
| All Indica | 659 | 12.14% | 87.86% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 302 | 10.26% | 89.74% |
| Indica II | 179 | 12.85% | 87.15% |
| Indica Intermediate | 178 | 14.61% | 85.39% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228400784 | A->T | INTERGENIC | None |