Detailed information of SNP:
|
SNP ID:
sf0228424782(Gbrowse)
Chromosome: chr02 Position: 28424782 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 85.21% | 14.79% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 493 | 77.48% | 22.52% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 92 | 17.39% | 82.61% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228424782 | C->T | INTERGENIC | None |