Detailed information of SNP:
|
SNP ID:
sf0228437101(Gbrowse)
Chromosome: chr02 Position: 28437101 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1234 | 97.97% | 2.03% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 325 | 94.15% | 5.85% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 202 | 94.06% | 5.94% |
| Tropical Japonica | 72 | 98.61% | 1.39% |
| Japonica Intermediate | 51 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228437101 | T->G | INTERGENIC | None |