Detailed information of SNP:
|
SNP ID:
sf0228450057(Gbrowse)
Chromosome: chr02 Position: 28450057 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.30% | 44.70% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 494 | 2.02% | 97.98% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228450057 | C->T | INTERGENIC | None |