Detailed information of SNP:
|
SNP ID:
sf0228462926(Gbrowse)
Chromosome: chr02 Position: 28462926 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 90.57% | 9.43% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 492 | 90.24% | 9.76% |
| Aus | 65 | 15.38% | 84.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 90 | 71.11% | 28.89% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228462926 | G->A | INTERGENIC | None |