Detailed information of SNP:
|
SNP ID:
sf0228464854(Gbrowse)
Chromosome: chr02 Position: 28464854 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1279 | 98.20% | 1.80% |
| All Indica | 795 | 99.75% | 0.25% |
| All Japonica | 368 | 94.84% | 5.16% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 234 | 94.02% | 5.98% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228464854 | C->T | INTERGENIC | None |