Detailed information of SNP:
|
SNP ID:
sf0228489565(Gbrowse)
Chromosome: chr02 Position: 28489565 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 73.88% | 26.12% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 493 | 30.63% | 69.37% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 14.76% | 85.24% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228489565 | T->G | LOC_Os02g46680(LOC_Os02g46680.1) | INTRON |