Detailed information of SNP:
|
SNP ID:
sf0228491607(Gbrowse)
Chromosome: chr02 Position: 28491607 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 62.94% | 37.06% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 496 | 17.74% | 82.26% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 334 | 9.88% | 90.12% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228491607 | T->G | LOC_Os02g46680(LOC_Os02g46680.1) | INTRON |