Detailed information of SNP:
|
SNP ID:
sf0228492540(Gbrowse)
Chromosome: chr02 Position: 28492540 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.13% | 9.87% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 496 | 89.11% | 10.89% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228492540 | C->A | LOC_Os02g46680(LOC_Os02g46680.1) | Synonymous |