Detailed information of SNP:
|
SNP ID:
sf0228492770(Gbrowse)
Chromosome: chr02 Position: 28492770 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1278 | 84.35% | 15.65% |
| All Indica | 794 | 99.62% | 0.38% |
| All Japonica | 369 | 49.05% | 50.95% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 234 | 30.77% | 69.23% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 44 | 52.27% | 47.73% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228492770 | A->G | LOC_Os02g46680(LOC_Os02g46680.1) | UTR_5_PRIME |