Detailed information of SNP:
|
SNP ID:
sf0228498290(Gbrowse)
Chromosome: chr02 Position: 28498290 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 95.90% | 4.10% |
| All Indica | 796 | 98.74% | 1.26% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228498290 | A->G | INTERGENIC | None |