Detailed information of SNP:
|
SNP ID:
sf0228526830(Gbrowse)
Chromosome: chr02 Position: 28526830 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 93.49% | 6.51% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 479 | 97.08% | 2.92% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 84 | 88.10% | 11.90% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228526830 | C->T | INTERGENIC | None |