Detailed information of SNP:
|
SNP ID:
sf0228539929(Gbrowse)
Chromosome: chr02 Position: 28539929 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.72% | 36.28% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 495 | 20.61% | 79.39% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228539929 | A->G | LOC_Os02g46740(LOC_Os02g46740.1) | INTRON |