Detailed information of SNP:
|
SNP ID:
sf0228575078(Gbrowse)
Chromosome: chr02 Position: 28575078 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 90.33% | 9.67% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 474 | 72.78% | 27.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 64.60% | 35.40% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 60 | 81.67% | 18.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228575078 | T->C | INTERGENIC | None |