Detailed information of SNP:
|
SNP ID:
sf0228603767(Gbrowse)
Chromosome: chr02 Position: 28603767 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 90.16% | 9.84% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 490 | 73.88% | 26.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 330 | 64.55% | 35.45% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228603767 | G->A | LOC_Os02g46900(LOC_Os02g46900.1) | Synonymous |